Publications

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Web Article
SHARP BOUNDARY ELECTROCARDIAC SIMULATIONS, XUE, SHUAI, LIM HYUNKYUNG, GLIMM JAMES, FENTON FLAVIO H., and CHERRY ELIZABETH M. , Stony Brook, (2016)  (725.88 KB)
Miscellaneous
On The Verification of Neural ODEs with Stochastic Guarantees, Gruenbacher, Sophie, Hasani Ramin, Lechner Mathias, Cyranka Jacek, Smolka Scott A., and Grosu Radu , (2020)
Liquid Time-constant Networks, Hasani, Ramin, Lechner Mathias, Amini Alexander, Rus Daniela, and Grosu Radu , (2020)
Lagrangian Reachtubes: The Next Generation, Gruenbacher, Sophie, Cyranka Jacek, Lechner Mathias, Islam Md. Ariful, Smolka Scott A., and Grosu Radu , (2020)
Adversarial Training is Not Ready for Robot Learning, Lechner, Mathias, Hasani Ramin, Grosu Radu, Rus Daniela, and Henzinger Thomas A. , (2021)
Journal Article
Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)
Simultaneous Quantification of Spatially Discordant Alternans in Voltage and Intracellular Calcium in Langendorff-Perfused Rabbit Hearts and Inconsistencies with Models of Cardiac Action Potentials and Ca Transients, Uzelac, Ilija, Ji Yanyan C., Hornung Daniel, Schröder-Scheteling Johannes, Luther Stefan, Gray Richard A., CHERRY ELIZABETH M., and FENTON FLAVIO H. , Frontiers in Physiology, Volume 8, (2017)
Simulating waves, chaos and synchronization with a microcontroller, Welsh, Andrea J., Delgado Cristian, Lee-Trimble Casey, Kaboudian Abouzar, and Fenton Flavio H. , Chaos: An Interdisciplinary Journal of Nonlinear Science, 12/2019, Volume 29, Issue 12, (2019)
The role of conductivity discontinuities in design of cardiac defibrillation, Lim, Hyunkyung, Cun Wenjing, Wang Yue, Gray Richard A., and Glimm James , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 28, p.013106, (2018)  (3 MB) (552.91 KB)
An Optimization-Based Algorithm for the Construction of Cardiac Purkinje Network Models, Ulysses, Jesuliana N., Berg Lucas A., CHERRY ELIZABETH M., Liu Ben R., Santos Rodrigo W. dos, de Barros Bruno G., Rocha Bernardo M., and de Queiroz Rafael A. B. , IEEE Transactions on Biomedical Engineering, Volume 65, p.2760–2768, (2018)
A Network-based Cardiac Electrophysiology Simulator with Realistic Signal Generation and Response to Pacing Maneuvers, Iravanian, Shahriar, Uzelac Ilija, Kaboudian Abouzar, Langberg Jonathan, and Fenton Flavio , Computing in Cardiology, (2021)
Excitable dynamics in neural and cardiac systems, Barrio, Roberto, Coombes Stephen, Desroches Mathieu, Fenton Flavio, Luther Stefan, and Pueyo Esther , Communications in Nonlinear Science and Numerical Simulation, 07/2020, Volume 86, (2020)
Electromechanical vortex filaments during cardiac fibrillation, Christoph, Jan, Chebbok M., Richter Carl, Schröder-Schetelig Johannes, Bittihn Philip, Stein Seth, Uzelac Ilija, FENTON FLAVIO H., Hasenfuss Gerd, Gilmour Robert F., et al. , Nature, Volume 555, p.667+, (2018)  (11.33 MB)
Effects of model error on cardiac electrical wave state reconstruction using data assimilation, LaVigne, Nicholas S., Holt Nathan, Hoffman Matthew J., and Cherry Elizabeth M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093911, (2017)
Dynamic Network Model from Partial Observations, K., Elahe Ghalebi, Mirzasoleiman Baharan, Grosu Radu, and Leskovec Jure , CoRR, Volume abs/1805.10616, (2018)  (476.08 KB)
Discordant Alternans as a Mechanism for Initiation of Ventricular Fibrillation In Vitro, Munoz, Laura, Gelzer Anna R. M., Fenton Flavio, Qian Wei, Lin WeiYe, Gilmour Robert F., and Otani Niels F. , Journal of the American Heart Association, 09, Volume 7, (2018)  (4.08 MB)
Delay differential equation-based models of cardiac tissue: Efficient implementation and effects on spiral-wave dynamics, Gomes, Johnny Moreira, Lobosco Marcelo, Santos Rodrigo Weber dos, and CHERRY ELIZABETH M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 29, p.123128, (2019)
Data-Driven Robust Control for a Closed-Loop Artificial Pancreas, Paoletti, N., Liu K. S., Chen H., Smolka S. A., and Lin S. , IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11/2020, Volume 17, Issue 6, (2020)
Data-Driven Robust Control for a Closed-Loop Artificial Pancreas, Paoletti, N., Liu K. S., Chen H., Smolka S. A., and Lin S. , IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11/2020, Volume 17, Issue 6, (2020)
Controllability of voltage- and calcium-driven cardiac alternans in a map model, LM, Munoz, MO Ampofo, and EM Cherry , Chaos, (2021)
Automated Synthesis of Safe Digital Controllers for Sampled-Data Stochastic Nonlinear Systems, Shmarov, F., Soudjani S., Paoletti N., Bartocci E., Lin S., Smolka S. A., and Zuliani P. , IEEE Access, (2020)
Conference Paper
Verification of Neural ODEs with Stochastic Guarantees, Gruenbacher, S., Cyranka J., Lechner M., Smolka S. A., and Grosu R. , Proceedings of AAAI-21, 35th AAAI Conference on Artificial Intelligence, 02/2021, (2021)
Towards Automated Comprehension and Alignment of Cardiac Models at the System Invariant Level, Huang, Samuel, Diep Madeline, Jang Kuk, Cherry Elizabeth M., Fenton Flavio H., Cleaveland Rance, Lindvall Mikael, Mangharam Rahul, and Porter Adam , CSBio'20: Proceedings of the Eleventh International Conference on Computational Systems-Biology and Bioinformatics, (2020)
SMT-based Synthesis of Safe and Robust PID Controllers for Stochastic Hybrid Systems, Shmarov, Fedor, Paoletti Nicola, Bartocci Ezio, Lin Shan, Smolka Scott, and Zuliani Paolo , Haifa Verification Conference, to appear, (2017)
The role of conductivity discontinuities in design of cardiac de brillation, LIM, HYUNKYUNG, Cun Wenjing, Gray Richard A., and GLIMM JAMES , (2017)  (1.36 MB) (552.91 KB) (2.25 MB)

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