Publications

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2016
Bifurcation Analysis of Cardiac Alternans Using δ -Decidability., Islam, Md. Ariful, Byrne Greg, Kong Soonho, Clarke Edmund M., Cleaveland Rance, Fenton Flavio H., Grosu Radu, Jones Paul L., and Smolka Scott A. , CMSB, (2016)  (795.28 KB)
Cybercardia project: Modeling, verification and validation of implantable cardiac devices, Islam, Md Ariful, Lim Hyunkyung, Paoletti Nicola, Abbas Houssam, Jiang Zhihao, Cyranka Jacek, Cleaveland Rance, Gao Sicun, Clarke Edmund, Grosu Radu, et al. , 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), (2016)
Experience Report: Model-Based Test Automation of a Concurrent Flight Software Bus, Ganesan, D., Lindvall M., Hafsteinsson S., Cleaveland R., Strege S. L., and Moleski W. , 2016 IEEE 27th International Symposium on Software Reliability Engineering (ISSRE), Oct, (2016)  (976.61 KB)
High-level modeling for computer-aided clinical trials of medical devices, Abbas, Houssam, Jiang Zhihao, Jang Kuk Jin, Beccani Marco, Liangy Jackson, and Mangharam Rahul , High Level Design Validation and Test Workshop (HLDVT), 2016 IEEE International, (2016)  (4.01 MB)
In-silico pre-clinical trials for implantable cardioverter defibrillators, Jiang, Zhihao, Abbas Houssam, Jang Kuk Jin, Beccani Marco, Liang Jackson, Dixit Sanjay, and Mangharam Rahul , Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the, (2016)  (4.99 MB)
SHARP BOUNDARY ELECTROCARDIAC SIMULATIONS, XUE, SHUAI, LIM HYUNKYUNG, GLIMM JAMES, FENTON FLAVIO H., and CHERRY ELIZABETH M. , Stony Brook, (2016)  (725.88 KB)
2017
Data assimilation for cardiac electrical dynamics, Cherry, E. M., Cairns D. I., Holt N., LaVigne N. S., Fenton F. H., and Hoffman M. J. , Proceedings of the 5th {International} {Conference} on {Computational} and {Mathematical} {Biomedical} {Engineering}, Pittsburgh, PA, (2017)
Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise Uncertainties, Paoletti, Nicola, Liu Kin Sum, Smolka Scott A., and Lin Shan , Computational Methods in Systems Biology, (2017)
Data-Driven Robust Control for Type 1 Diabetes Under Meal and Exercise Uncertainties, Paoletti, Nicola, Liu Kin Sum, Smolka Scott A., and Lin Shan , Computational Methods in Systems Biology, (2017)
Effects of model error on cardiac electrical wave state reconstruction using data assimilation, LaVigne, Nicholas S., Holt Nathan, Hoffman Matthew J., and Cherry Elizabeth M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093911, (2017)
A novel ICD morphology discriminator to improve discrimination between Ventricular and Supraventricular tachycardias, Abbas, H., Jang K.J., Liang J., Dixit S., and Mangharam R. , In Heart Rhythm Scientific Sessions, Chicago, 05/2017, (2017)  (77.23 KB)
The role of conductivity discontinuities in design of cardiac de brillation, LIM, HYUNKYUNG, Cun Wenjing, Gray Richard A., and GLIMM JAMES , (2017)  (1.36 MB) (552.91 KB) (2.25 MB)
Simultaneous Quantification of Spatially Discordant Alternans in Voltage and Intracellular Calcium in Langendorff-Perfused Rabbit Hearts and Inconsistencies with Models of Cardiac Action Potentials and Ca Transients, Uzelac, Ilija, Ji Yanyan C., Hornung Daniel, Schröder-Scheteling Johannes, Luther Stefan, Gray Richard A., CHERRY ELIZABETH M., and FENTON FLAVIO H. , Frontiers in Physiology, Volume 8, (2017)
SMT-based Synthesis of Safe and Robust PID Controllers for Stochastic Hybrid Systems, Shmarov, Fedor, Paoletti Nicola, Bartocci Ezio, Lin Shan, Smolka Scott, and Zuliani Paolo , Haifa Verification Conference, to appear, (2017)
2018
Automated Specification Extraction and Analysis with Specstractor, Schulze, Christoph, Cleaveland Rance, and Lindvall Mikael , Software Engineering and Formal Methods - 16th International Conference, {SEFM} 2018, Held as Part of {STAF} 2018, Toulouse, France, June 27-29, 2018, Proceedings, (2018)
Declarative vs Rule-based Control for Flocking Dynamics, Mehmood, Usama, Paoletti Nicola, Phan Dung, Grosu Radu, Lin Shan, Stoller Scott D., Tiwari Ashish, Yang Junxing, and Smolka Scott A. , Proceedings of the 33rd Annual ACM Symposium on Applied Computing, New York, NY, USA, (2018)  (904.24 KB)
Discordant Alternans as a Mechanism for Initiation of Ventricular Fibrillation In Vitro, Munoz, Laura, Gelzer Anna R. M., Fenton Flavio, Qian Wei, Lin WeiYe, Gilmour Robert F., and Otani Niels F. , Journal of the American Heart Association, 09, Volume 7, (2018)  (4.08 MB)
Dynamic Network Model from Partial Observations, K., Elahe Ghalebi, Mirzasoleiman Baharan, Grosu Radu, and Leskovec Jure , CoRR, Volume abs/1805.10616, (2018)  (476.08 KB)
Electromechanical vortex filaments during cardiac fibrillation, Christoph, Jan, Chebbok M., Richter Carl, Schröder-Schetelig Johannes, Bittihn Philip, Stein Seth, Uzelac Ilija, FENTON FLAVIO H., Hasenfuss Gerd, Gilmour Robert F., et al. , Nature, Volume 555, p.667+, (2018)  (11.33 MB)
OpenUAV: A UAV Testbed for the CPS and Robotics Community, Schmittle, Matt, Lukina Anna, Vacek Lukas, Das Jnaneshwar, Buskirk Christopher P., Rees Stephen, Sztipanovits Janos, Grosu Radu, and Kumar Vijay , Proceedings of the 9th ACM/IEEE International Conference on Cyber-Physical Systems, Piscataway, NJ, USA, (2018)  (825.63 KB)
An Optimization-Based Algorithm for the Construction of Cardiac Purkinje Network Models, Ulysses, Jesuliana N., Berg Lucas A., CHERRY ELIZABETH M., Liu Ben R., Santos Rodrigo W. dos, de Barros Bruno G., Rocha Bernardo M., and de Queiroz Rafael A. B. , IEEE Transactions on Biomedical Engineering, Volume 65, p.2760–2768, (2018)
The role of conductivity discontinuities in design of cardiac defibrillation, Lim, Hyunkyung, Cun Wenjing, Wang Yue, Gray Richard A., and Glimm James , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 28, p.013106, (2018)  (3 MB) (552.91 KB)
2019
Delay differential equation-based models of cardiac tissue: Efficient implementation and effects on spiral-wave dynamics, Gomes, Johnny Moreira, Lobosco Marcelo, Santos Rodrigo Weber dos, and CHERRY ELIZABETH M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 29, p.123128, (2019)
From Automated MRI Scan to Finite Elements, Glimm, James, Lim Hyunkyung, Bishop Martin, and Kim Soojin , p.35-48, (2019)  (647.88 KB)
Simulating waves, chaos and synchronization with a microcontroller, Welsh, Andrea J., Delgado Cristian, Lee-Trimble Casey, Kaboudian Abouzar, and Fenton Flavio H. , Chaos: An Interdisciplinary Journal of Nonlinear Science, 12/2019, Volume 29, Issue 12, (2019)

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