Publications

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Conference Paper
Towards Automated Comprehension and Alignment of Cardiac Models at the System Invariant Level, Huang, Samuel, Diep Madeline, Jang Kuk, Cherry Elizabeth M., Fenton Flavio H., Cleaveland Rance, Lindvall Mikael, Mangharam Rahul, and Porter Adam , CSBio'20: Proceedings of the Eleventh International Conference on Computational Systems-Biology and Bioinformatics, (2020)
Towards Automated Comprehension and Alignment of Cardiac Models at the System Invariant Level, Huang, Samuel, Diep Madeline, Jang Kuk, Cherry Elizabeth M., Fenton Flavio H., Cleaveland Rance, Lindvall Mikael, Mangharam Rahul, and Porter Adam , CSBio'20: Proceedings of the Eleventh International Conference on Computational Systems-Biology and Bioinformatics, (2020)
UML-VT: A Formal Verification Environment for UML Activity Diagrams., Daw, Zamira, Mangino John, and Cleaveland Rance , P&D@ MoDELS, (2015)
Verification of Neural ODEs with Stochastic Guarantees, Gruenbacher, S., Cyranka J., Lechner M., Smolka S. A., and Grosu R. , Proceedings of AAAI-21, 35th AAAI Conference on Artificial Intelligence, 02/2021, (2021)
Journal Article
Abstract Model Repair, Chatzieleftheriou, G., Bonakdarpour B., Katsaros P., and Smolka S. A. , Logical Methods in Computer Science, Volume 3:11, (2015)
Accelerating simulations of cardiac electrical dynamics through a multi‐GPU platform and an optimized data structure, Vasconcellos, Eduardo C., Clua Esteban W. G., Fenton Flavio H., and Zamith Marcelo , Concurrency and Computation: Practice and Experience, 03/2020, Volume 32, Issue 5, (2020)
Alternans promotion in cardiac electrophysiology models by delay differential equations, Gomes, Johnny M., Santos Rodrigo Weber dos, and Cherry Elizabeth M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093915, (2017)
Better Automata through Process Algebra, Cleaveland, Rance , arXiv preprint arXiv:2002.07562, (2020)
Comparing model checkers for timed UML activity diagrams, Daw, Zamira, and Cleaveland Rance , Science of Computer Programming, Volume 111, p.277–299, (2015)
Control and anticontrol of chaos in fractional-order models of Diabetes, HIV, Dengue, Migraine, Parkinson's and Ebola virus diseases, Borah, Manashita, Das Debanita, Gayan Antara, Fenton Flavio, and Cherry Elizabeth , Chaos, Solitons & Fractals, 12/2021, Volume 153, (2021)
Corrections to "A Menagerie of Timed Automata", Keiren, Jeroen J. A., Fontana Peter, and Cleaveland Rance , ACM Comput. Surv., Volume 50, p.42:1–42:8, (2017)  (221.78 KB)
Data-Driven Robust Control for a Closed-Loop Artificial Pancreas, Paoletti, N., Liu K. S., Chen H., Smolka S. A., and Lin S. , IEEE/ACM Transactions on Computational Biology and Bioinformatics, 11/2020, Volume 17, Issue 6, (2020)
Data-Driven Uncertainty Quantification for Cardiac Electrophysiological Models: Impact of Physiological Variability on Action Potential and Spiral Wave Dynamics, Pathmanathan, Pras, Galappaththige Suran K., Cordeiro Jonathan M., Kaboudian Abouzar, Fenton Flavio H., and Gray Richard A. , Frontiers in physiology, 11/2020, Volume 11, (2020)
Delay differential equation-based models of cardiac tissue: Efficient implementation and effects on spiral-wave dynamics, Gomes, Johnny Moreira, Lobosco Marcelo, Santos Rodrigo Weber dos, and CHERRY ELIZABETH M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 29, p.123128, (2019)
Distinguishing mechanisms for alternans in cardiac cells using constant-diastolic-interval pacing, Cherry, Elizabeth M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093902, (2017)
Effects of model error on cardiac electrical wave state reconstruction using data assimilation, LaVigne, Nicholas S., Holt Nathan, Hoffman Matthew J., and Cherry Elizabeth M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093911, (2017)
Efficient parameterization of cardiac action potential models using a genetic algorithm, Cairns, Darby I., Fenton Flavio H., and Cherry E. M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093922, (2017)
Efficient parameterization of cardiac action potential models using a genetic algorithm, Cairns, Darby I., Fenton Flavio H., and Cherry E. M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093922, (2017)
Electromechanical vortex filaments during cardiac fibrillation, Christoph, Jan, Chebbok M., Richter Carl, Schröder-Schetelig Johannes, Bittihn Philip, Stein Seth, Uzelac Ilija, FENTON FLAVIO H., Hasenfuss Gerd, Gilmour Robert F., et al. , Nature, Volume 555, p.667+, (2018)  (11.33 MB)
Electromechanical vortex filaments during cardiac fibrillation, Christoph, Jan, Chebbok M., Richter Carl, Schröder-Schetelig Johannes, Bittihn Philip, Stein Seth, Uzelac Ilija, FENTON FLAVIO H., Hasenfuss Gerd, Gilmour Robert F., et al. , Nature, Volume 555, p.667+, (2018)  (11.33 MB)
Excitable dynamics in neural and cardiac systems, Barrio, Roberto, Coombes Stephen, Desroches Mathieu, Fenton Flavio, Luther Stefan, and Pueyo Esther , Communications in Nonlinear Science and Numerical Simulation, 07/2020, Volume 86, (2020)
An extensible formal semantics for UML activity diagrams, Daw, Zamira, and Cleaveland Rance , arXiv preprint arXiv:1604.02386, (2016)
Fatal arrhythmias: another reason why doctors remain cautious about chloroquine/hydroxychloroquine for treating COVID-19, Uzelac, Ilija, Iravanian Shahriar, Ashikaga Hiroshi, Bhatia Neal K., Herndon Conner, Kaboudian Abouzar, Gumbart James C., Cherry Elizabeth M., and Fenton Flavio H. , Heart Rhythm, 09/2020, Volume 17, Issue 9, (2020)
Improving Invariant Mining via Static Analysis, Schulze, Christoph, and Cleaveland Rance , ACM Trans. Embed. Comput. Syst., Volume 16, p.167:1–167:20, (2017)  (566.5 KB)
Interactive 3D Human Heart Simulations on Segmented Human MRI Hearts, Berman, John P., FENTON FLAVIO H., CHERRY ELIZABETH M., Iles Tinen, Iaizzo Paul A., and Kaboudian Abouzar , (2021)

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